Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015855200.1_cds_XP_016512762.1_25373
CDS Infomation

[gene=LOC107829810] [db_xref=GeneID:107829810] [protein=probable pectinesterase/pectinesterase inhibitor 20] [protein_id=XP_016512762.1] [location=complement(join(5212..5915,7788..8147,8700..9195))] [gbkey=CDS]
Sequence

ATGGCATTCACACATTCTCTCCTTGTATGCTTCTTACTTCAATTCTTCTTCTCTGCTTCT
CATGCATCTCTCTCTTCTGATGAAATTTGCAGCAACACCCCTTTTCCTAACTTATGCAAA
TCTTTACTCCCTCAGAATAATTCTATTGATATTTATGACTCAGGAAGGCTCTCCATCCAG
CTTTCCCTTTCAACAACTAGTCAGATTCTTAAATCAATCAATGATTTTCTCAATCCGATT
AATCTATTACTGCCTAAAAGCACCAGTTCTGCCCTCCAAGATTGCAAGTTCCTCCTTGGC
CTAAACGTTGATTTATTATCTAATGTTGCTGCCCTTACTAAGAAACCAAAAGATTTCCTT
GAGAATACAGAAGCAGATGATGTAGTAACTTGGCTTAGTGCAACCATAACCAATAAACAA
ACTTGTTTGGATGGTCTTCTAGTTGCACCTTCAATTTTACAGGTTTCTAAGTTGATTACA
CCCTTAATTTCTAAAGGAAGCATGACGTGTAGCGTGTCACTCGCGCTCTTTAAGAATGGG
TGGAATCCTGATTCTATTTTAGGGAAGGTAATAAGTTGGAGTATGCTGAAAATTAGCCAA
AAGGTAGTAGTAAATCCTGATGGAACTGGGGATTATACTACTATCAATGATGCAATCGCA
GCTGCCCCGGACAATTGCCCAGCAAATGAAGGCTATTACCAGATATATGTGGTTGCTGGT
GTATACCATGAGTATGTTTCTATTGCTAACAACAAGAAGTATTTGATGATGGTCGGTGAT
GGCATAGACAAGGCTATAATCACTGGGAATAGAAATGTACCTGATGGATGGACAACTTTC
AATTCTGCCACTTTTGCTGTAGATGGACAAGGATTTGTGGCAGTAAACATTACCTTTAAG
AATACAGCAGGAGCAGCAAAATTCCAAGCAGTAGCCGTTAGGAATAGTGCTGATCTATCC
GCATTCTACCACTGCAGCTTTGAAGGGTATCAAGACACTCTGTACACATATTCCCTGAGA
CAATTCTACAAAGACTGTAATATCTATGGGACTATAGATTTCATATTCGGAAATGCAGCA
GTTGTTTTCCAAAACTGTAACATATATCCACGCCTTCCATTGCGCGGCCAGTTTAATGCA
ATTACAGCACAGGGCAGAACAGACATTAACCAGAACACAGGCATATCCATTCACAAATGT
ACCATTACTCCCGCTTCTGACTTAGCTTCGTATAATGGCAGTAATCCAGTACGGACATAC
TTAGGCAGGCCATGGAAAGAGTATTCGCGAACTGTTTGTATGCAATCATTTATGGACAGT
TTTATTCATCCTGATGGTTGGTCGATTTGGACAGGAGATTTTGCGTTAAGTACATTGTGT
TATGCTGAATATAAGAACACGGGCCCAGGATCGGATACCAGTAACAGGGTTACTTGGCCT
GGTTATCATGGTGAGATTAACTTCCTGGATGCATCTTATTTCACTGTCTCCAATTTTATA
GTGGGGAATTATTGGCTGCCTTGGACTGGAGTCCCTTACACTGGTGGTTTATATTTATAA

Peptide Sequence

PEP ID

XP_016512762.1
PEP Infomation

PREDICTED: probable pectinesterase/pectinesterase inhibitor 20 [Nicotiana tabacum]
Sequence

MAFTHSLLVCFLLQFFFSASHASLSSDEICSNTPFPNLCKSLLPQNNSIDIYDSGRLSIQ
LSLSTTSQILKSINDFLNPINLLLPKSTSSALQDCKFLLGLNVDLLSNVAALTKKPKDFL
ENTEADDVVTWLSATITNKQTCLDGLLVAPSILQVSKLITPLISKGSMTCSVSLALFKNG
WNPDSILGKVISWSMLKISQKVVVNPDGTGDYTTINDAIAAAPDNCPANEGYYQIYVVAG
VYHEYVSIANNKKYLMMVGDGIDKAIITGNRNVPDGWTTFNSATFAVDGQGFVAVNITFK
NTAGAAKFQAVAVRNSADLSAFYHCSFEGYQDTLYTYSLRQFYKDCNIYGTIDFIFGNAA
VVFQNCNIYPRLPLRGQFNAITAQGRTDINQNTGISIHKCTITPASDLASYNGSNPVRTY
LGRPWKEYSRTVCMQSFMDSFIHPDGWSIWTGDFALSTLCYAEYKNTGPGSDTSNRVTWP
GYHGEINFLDASYFTVSNFIVGNYWLPWTGVPYTGGLYL

Transcript Sequence

Gene sequence data has not been registered.